Results for "C"
Blogs
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter...ents (SAMtools) Primer sequence removal (iVar; amplicon data...t calling and consensus sequence generation routes (iVar vari...vo assembly Primer trimming (Cutadapt; amplicon data only)...891 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. &bul...h;862, FAMSA Multiple sequence alignment designed for huge...anek, A., Niemiec, M., GDC 2: Compression of large colle... Indexes of Large Genome Collections on a PC, PLOS...877 days ago
- Elgg is an open-source and highly customizable framework used for building an online social environment. It provides a...MySQL/MariaDB as a database backend, so you will need to inst...iaDB shell with the following command: FLUSH PRIVILEGES; EX...
725 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional Annotations of Proteins between Sequenced Genomes Compare structural...ce and epitope database. Search for influenza sequence, vacc...tool for intra- and inter-species variation among individual...691 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources for exploring the litera.... Haldane, J. B. S. 1932. The causes of evolution. Longmans....19-520. 2. Green R. E., Reich D., Pääbo S., 2010...xation of New Mutations." Proceedings of the National Academ...691 days ago
Finding a mimicry game for teaching on-line and mentioned general resources
Mimicry and other resources Mimicry games: Great Heliconius game: http://heliconius.org/evolving_butterflies...a bit less friendly: https://ccl.northwestern.edu/netlogo/mo...tLogo also has one: https://ccl.northwestern.edu/netlogo/mo...ttps://demonstrations.wolfram.com/ReplicatorMutatorDynamicsWi...691 days ago
- SLURM commands The following table shows SLURM commands on the SOE cluster. CommandDescription sbatch Submit batch scripts to the cluster...node is 128 GB. To see how much RAM per node your job is usi...List status info for a currently running job:...
683 days ago
Understanding DUMP files from NCBI Taxonomy database !
...t|\n" nodes.dmp file consists of taxonomy nodes. The description for each node includes...gdom, ...) embl code -- locus-name prefix; not....dmp file inherited MGC flag (1 or 0) -- 1 if n...nbsp; Genetic codes file (gencode.dmp): genetic code id --...674 days ago
- https://www.ncbi.nlm.nih.gov/nuccore/OM101125,OM101126,OM101127,OM101128,OM101129,OM101130? Zoonotic Henipavirus https://pubmed.ncbi.nlm.nih.gov/35921459/ https://www.ncbi.nlm.nih.gov/nuccore/OM06964...
646 days ago
Useful link to teach evolution !
Mimicry and other resources Mimicry games: Great Heliconius game: http://heliconius.org/evolving_butterflies...a bit less friendly: https://ccl.northwestern.edu/netlogo/mo...tLogo also has one: https://ccl.northwestern.edu/netlogo/mo...ttps://demonstrations.wolfram.com/ReplicatorMutatorDynamicsWi...592 days ago
