Ten recommendations for creating usable bioinformatics command line software
Bioinformatics software varies greatly in quality. In terms of usability, the command line interface is the first experience a us...will be used. Here I present ten recommendations for command line...s time, and improve the quality of scientific analyses.3635 days ago
Bioinformatics algorithms tutorials
Useful bioinformatics tutorial, such as De Bruijn Graphs for NGS AssemblyAlgorithms for PacBio ReadsSoftware and Hardware Concepts for BioinformaticsFinding us in Homolog.us (Search Algorithms)...to PERL, Python, R and C/C++ for Bioinformatics3619 days ago
Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffol...nd metagenomics. However, the construction of computational p...ortunities for data-intensive computational analyses in micro...3590 days ago
Integrative Genomics Viewer (IGV) tutorial
The Integrative Genomics Viewer (IGV) from the Broad Center allows you to view several types of dat...ed in any NGS analysis that employs a reference genome, including how reads...taset are mapped, gene annotations, and predicted genetic variants. http://...3600 days ago
COSMOS, our workflow management system for NGS data
COSMOS, our Python-based management system for implementing large-scale parallel workflows focusing on, but not restricted t...-read "NGS" sequencing data is open-access published via Advance Acc...research purposes at: http://cosmos.hms.harvard.edu/....3590 days ago
3574 days ago
Swabs to Genomes: A Comprehensive Workflow
The sequencing, assembly, and basic analysis of microbial genomes, once a painstaking...and expensive undertaking, has become almost trivial for researc...DNA library preparation and sequencing, and inexperience with bio...oubleshoot, and publish a simple, comprehensive workflow from the...3572 days ago
Java utilities for Next Generation Sequencing by Pierre Lindenbaum
Java utilities for Bioinformatics https://github.com/lindenb/jvarkit3535 days ago
3530 days ago
International Conference on Bioinformatics Models, Methods and Algorithms
...purpose of the International Conference on Bioinformatics Models, Me...nal systems and information technologies to the field of mole...opments in genome bioinformatics and computational biology. A...;Position Paper Authors Notification: November 6, 2014&n...3516 days ago