Results for "C"
Top-level pages
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently used too...file — output the contents of file less file ...ns. The values of u, g, and o can be any number between 0 and...ile.tar.gz files — create a tar with Gzip compress...2294 days ago
Awk for Bioinformatician and computational biologist
...is a programming language which allows easy manipulation of structured data and is mostly used for pattern scanning and processing. It sear.... NF is a builtin variable which represents the total number...TATATAcontig5 ACTTTATATATTYou can have as many blocks as you...2293 days ago
Computational resources for TE discovery and TE detection
...Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assemb...source and location for TE discovery and TE detection: BLAST...FINDER http://tlife.fudan.edu.cn/ltr_finder/ LTR_STRUC http...inder/ RepeatGluer http://nbcr.sdsc.edu/euler/intro_tmp.htm...2287 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
...ebinar will give an overview of the workflow which includes Transcriptome/ Genome al...will highlight the use of Strand NGS features such as PCA, sample correlation,...rand NGS. Details:Session 1: 28 Feb 2018, 9 AM CETSession 2: 28 Feb 2018, 8 AM...2277 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
...;non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and...eukaryotes, but a number of factors combine to make it far ra...e transmitted to offspring. Once there, it must not experienc...tection / download & compile 20525630 RANG...863 days ago
Python learning resources for bioinformatics and computational biologist !
...general-purpose language, which means it can be used to build just about anything, which will be made easy with the r...f Python Programming - Richard L. Halterman (PDF) (3.2)...with Algorithms and Data Structures using Python - Brad...2268 days ago
- IUPAC codes DNA: Nucleotide Code: Base: ---------...or U)..........Thymine (or Uracil) R.................A or G...or T M.................A or C B.................C or G or......Asx.................Aspartic acid or Asparagine C...........aa.................Any amino acid Y.................Tyr........
2258 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxford Academic https://academic.oup.com/bioinformatics/articl...sciencedirect.com/science/article/pii/S096098221731076X?via%3...so/jnarayan/Mail/view Tetra-Nucleotide Analysis (TNA) | BIOiP...2255 days ago
- ...ine.txt To get average for a column of numbers (here the second column $2): awk '{ sum +=...using pigz: pigz *.fastq To count all sequences in a fasta...les in your current folder: zcat *.gz | echo $((`wc -l`/4))...the last and first row in 5th column: awk '{if (!first){firs...
2231 days ago
Installing Bio::SCF perl module
...bsp;(they are written in C) so require a C compiler (it's easy...whether we are using the GNU C compiler... yeschecking wheth...eqIOPlain.Tpo"; exit 1; fiif gcc -DHAVE_CONFIG_H -I. -I. -I.....l/lib" || mkdir -p -- "/usr/local/lib" /usr/bin/install -c -m...2232 days ago
