BOL: Results for "CAT/BAT"

Results for "CAT/BAT"

- Surabhi Chaudhary@surabhi
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. Reads longer than this will be broken into 6kbp pieces and mapped independently. Code: $ ma...
2285 days ago
- Surabhi Chaudhary@surabhi
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignmen...
892 days ago

- Jit@jit.aber
WGS Celera Assembler version 8.3rc2
These are release notes for Celera Assembler version 8.3rc2, which was released on May 24, 2015.This distribution package provides a stable, tested, documented version...
2597 days ago
- Jit@jit.aber
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
dbCAN is a web server and DataBase for automated Carbohydrate-active enzyme ANnotation, funded by the BioEnergy Science Center of the DOE....
2548 days ago
+2 more Bookmarks

- Jit@jit.aber
List of Biotechnology Research Laboratory, University, and Centre in India
DEPARTMENT OF BIOTECHNOLOGY Centre For DNA Fingerprinting And Diagnostics (CDFD), Hyderabad ( Institute of Bioresources and Sustainable Development (IBSD), I...
2585 days ago
- Jit@jit.aber
Cheatsheet for Linux !!
Linux Commands Cheat Sheet File System ls — list items in current directory ls -l — list items in curr...
2889 days ago
+7 more Top-level pages

- Rahul Nayak@rahul
Sort FASTA sequence by length: cat f1.fasta| awk '{if($0 ~ /^>/){printf "%st", $0}else{print length($0)"t"$0}}'| sort -k2n,2| awk '{print $1"n"$3}' > sequence.fasta #Sort #Fasta #Trick #Onliner
3203 days ago
- Neelam Jha@neelam
Contact many files: $ for a in *.txt ; do cat $a >> newFile ; done #Linux #Tricks
2813 days ago
+12 more Wire posts

- Rahul Agarwal@raag
Tigers genome sequenced
Fifteen scientists led by Dr Jong Bhak of Genome Research Foundation, South Korea, decoded as many as 3 billion nucleotides (organic molecules that form the basic build...
3897 days ago

- Manisha Mishra@manisha
Roderic Guigó Lab
Research in our group focuses on the investigation of the signals involved in gene specification in genomic sequences (promoter elements, splice sites, translation init...
3548 days ago
- Neelam Jha@neelam
Cáceres Lab
Lab are included within the Genomics, Bioinformatics and Evolution group of the UAB, and collaborate closely with other researchers in the Barcelona area, such as Xavie...
961 days ago

- Jit@jit.aber
The Best Bioinformatics / Computational Biology Quotes
Bioinformatician are not anti-social; We are just genome friendly. Bioinformatician would love to change the biological world, but they won't give us the genetic cod...
3735 days ago

- Rahul Nayak@rahul
The Cat: evolution, domestication and Genome 10k
A public lecture by Dr Stephen J O'Brien at the UCD Earth Institute, University College Dublin, Ireland. Dr O'Brien is a world leading molecular biologist and dedicat...
3843 days ago

- EagleEye@santhilalsubhash
Calculate confidence interval for multiple columns in a matrix (table) using R function CI_normal and CI_tdist
#USAGE: CI_normal(matrix[,c(x:y)],97.5) - multiple column from a normal distribution #USAGE: CI_tdist(matrix[,c(x:y)],97.5) - multiple column from a t distribution #U...
2886 days ago
- Jit@jit.aber
Palindrome Simulation commands !
(base) ➜ palindromeAssemblySim more allCommands 3315 mutate.sh in= mutant15CH101.fasta out=mutant153CH101.fasta id=97 3316 mutate.sh in=mutant15CH101.fasta out=...
1750 days ago
+22 more Bio-Scripts

- Neelam Jha@neelam
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
Using KAT again (You will need the modules: KAT/2.1.1 and gnuplot/4.6.5) – we can plot the kmer content of the assembly compared to the kmer conten...
1352 days ago
- Jit@jit.aber
Comment on "HALC: High throughput algorithm for long read error correction"
Inputs Long reads in FASTA format. Contigs assembled from the corresponding short reads in FASTA format. The initial short reads in FASTA format (only...
2106 days ago
+2 more Comments