Results for "Case"
Top-level pages
Most Commonly used Awk by Bioinformatician
...chieve all its functionality with Perl, awk is simpler in many practical cases. Why awk? You can replace a...mple CSV: awk -F, '{print $1,$2}' substitution (sed is simpler in this case): awk '{sub(/test/, "no", $0...3906 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ical data in R. Many books on specific topics in R programming are also available through Amazon or other vendors. Cloud computing resources The case for cloud computing in genome...3773 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...cts/gemsim/GeneArtisan Simulation of Markers in Case-Control Study Designs http://...le.org/HAPGEN A simulator for the simulation of case control datasets at SNP marke...quantitative trait models. Family or unrelated case-control data can be simulated...3731 days ago
Perl one-liner for bioinformatician !!!
...N-ZA-Mn-za-m/' file #Convert the entire file into 13 characters offset(ROT13)perl -nle 'print uc' #Convert all text to uppercase:perl -nle 'print lc' #Convert text to lowercase:perl -nle 'print ucfirst lc'...3622 days ago
Next generation sequencing in R or bioconductor environment
...lizing ChIP-Seq data. Only a small selection of these packages is introduced here. Additional useful introductions to this topic are: BioC ChIP-seq Case Study and BioC ChIP-Seq. chi...3618 days ago
- ...minlength=50 Subsample 10% of the first 20000 pairs in an interleaved file: reformat.sh in=x.fq out=y.fq reads=20000 samplerate=0.1 int=t (in this case "int=t" overrides interleavin...
2708 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...tion file CCRaVAT and QuTie Description: (Wellcome Trust Sanger) Case-Control Rare Variant Analysis...bed on website Output: HOMOG.OUT INTERSNP Description: GWIA for case-control SNP and quantitative...2902 days ago
Tools for Searching Repeats And Palindromic Sequences
...s read the same in either direction. For example, a sequence of 5' GAATTC3' on one strand would be complimented by a 3' CTTAAG 5' strand. In either case, when either strand is read f...2205 days ago
Source Code and Pseudo Code !!
...ly "sequence," "selection, " "iteration," and a case-type statement. In C, "seque...as the "while," " do," and the "for," while the case-type statement is satisfied b...is also VERY good and is language independent. Case...EndCase; If...Endif; Call ....2653 days ago
Converting BLAST output into CSV
...to do something with all this BLAST output. Generally, that’s the case - you want to retrieve all ma...think of it as a way to get ahold of a particular set of files. In this case, we’ve placed the files...2331 days ago
