BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...int=tThis will produce 3 output files:out_ecoli.fq (ecoli reads)out_salmonella.fq (salmonella reads)clean.fq (unmapped reads)In this case, "int=t" means that the input...2325 days ago
PerlOneLiner for Bioinformatician
...ntities -le 'print decode_entities($string)' # Convert all text to uppercaseperl -nle 'print uc'perl -ple '$_=uc'perl -nle 'print "\U$_"' # Convert all text to lowercaseperl -nle 'print lc'perl -ple...2313 days ago
Python learning resources for bioinformatics and computational biologist !
...scientific computing with python - J.R. Johansson (2.7) Making Games with Python & Pygame - Al Sweigart (2.7) Modeling Creativity: Case Studies in Python - Tom...2266 days ago
2074 days ago
Steps to find all the repeats in the genome !
...t files to be saved. <min_length> and <max_length>: The minimum and maximum lengths of the repeats you want to find (in this case, 2 and 9). Analyze the...259 days ago