Results for "Check"
Bio-Scripts
Perl script to check fastq reads qualities !
#!/usr/bin/env perl use strict; use warnings; sub readfq { my ($fh, $aux) = @_; @$aux = [undef, 0] if (!defined(@$aux)); return if ($aux->[1]); if (!def...2147 days ago
Installing Busco version 4.0.6
...ule-load-conditional-0.68-pl526_2 perl-module-metad~ bioconda/linux-64::perl-module-metadata-1.000036-pl526_0 perl-params-check bioconda/linux-64::perl-params-check-0.38-pl526_1 perl-parent...1446 days ago
Perl subroutine for reading multifasta file !
sub readfasta { (my $file)=@_; my %sequence; my $header; my $temp_seq; #suppose fasta files contains multiple sequences; open (IN, "2137 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the reference multifasta file name her...2133 days ago
Install Parrot Virtual Machine !
...Parrot/Config/Generated.pm"? at Configure.pl line 84. Deleting gcov-generated files Deleting cover-generated html files init::manifest - Check MANIFEST........................1530 days ago
- ...one. Resolving deltas: 100% (223/223), done. Checking connectivity... done. ➜...e CXX compiler identification is GNU 5.4.0 -- Check for working C compiler: /usr/...stddef.h -- Looking for stddef.h - found -- Check size of off64_t -- Check siz...
2092 days ago
Install Python locally on shared Linux server !
...te properly. At this point, you should be #able to see a new python. To check, run this command: which p...#Run the following command to install pip as a local user wget --no-check-certificate https://bootstrap...2091 days ago
- ...equencing level attributes, e.g. adapters CheckIlluminaDirectory (Picard)...ss-sample contamination CalculateReadGroupChecksum (Picard) Creates...icShortMutations (EXPERIMENTAL Tool) Check the variants in a VCF against...
2068 days ago
- ...rayan/FALCON-examples/.git/git-sym-local/links os.symlink('.git/git-sym-local/links', '/home/users/j/n/jnarayan/FALCON-examples/.git-sym') git: 'check-ignore' is not a git command....
2027 days ago
Perl script to run in parellel !
...sequence_data{$accession_number}{problem_desc} = "-"; #everybody starts fine if ($sequence_data{$accession_number}{status} eq "OK") { # Add check points here...1680 days ago
