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mrFAST: Micro Read Fast Alignment Search Tool
...l duplications. mrFAST maps short reads with respect to user defined error threshold, including indels up to 4+4 bp. This manual, describes how to choose the parameters and tune mrFAS...2941 days ago
- ...ize, heterozygosity rate, and repeat content from unprocessed short reads. These features are essential for studying genome evolution, and help to choose parameters for downstream ana...
2355 days ago
- ...tation in general, we suggest that you start by learning the basics. You should begin by downloading the program from here. You will need to choose the link that matches your co...
2756 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
...rent sets of annotations, including taxonomic assignments from conserved marker genes or SSU rRNA genes, can be imported simultaneously; users can choose which annotations to plot. Bi...2606 days ago
GMOL: An Interactive Tool for 3D Genome Structure Visualization
GMOL was developed based upon our multi-scale approach that allows a user to scale between six separate levels within the genome. With GMOL, a user can choose any unit at any scale and scale it up or down to visualize its structure and retrieve corresponding genome sequences.2246 days ago
transrate: Understanding your transcriptome assembly
...ail and compares it to experimental evidence such as the sequencing reads, reporting quality scores for contigs and assemblies. This allows you to choose between assemblers and parame...2132 days ago
SynVisio: An Interactive Multiscale Synteny Visualization Tool for McScanX.
...near Parallel plots, Hive plots, Stacked Parallel Plots and Dot plots. Users can configure the type of plots required and then choose the source and the target chr...1445 days ago
- ...ches are done. ElasticBLAST also selects the instance (i.e., machine) type for you based on database size. Of course, you can also choose the instance type manually if...
616 days ago
Orthoflow: workflow for phylogenetic inference of genome-scale datasets of protein-coding genes
...gh the use of OrthoSNAP, many additional ortholog alignments can be generated from multi-copy gene families. For phylogenetic inference, users can choose a supermatrix approach and/or...84 days ago
