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CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation of those i...mapping inversions as small as 31 bp. Analysis of the predicted evolutionary breakpoints in the human lineage confirms...2536 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and between genomes is essential for comparative genomics. Various processes including inser...2352 days ago
2350 days ago
Reference-free prediction of rearrangement breakpoint reads
lideSort-BPR ( b reak p oint r eads) is based on a fast al...to a dataset with a sequencing depth of 100×, it finds ∼88% of the breakpoints correctly with no false-posit...2242 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
CoNvex Gap-cost alignMents for Long Reads (ngmlr) is a long-read mapper designed to sens...makes it especially effective at more precisely identifying the position of breakpoints stemming from structural vari...2194 days ago
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