Results for "Chromosomes"
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LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful fo...2944 days ago
- ...solutions starting from aligned reads up to in-depth analyses. Importantly, HiCdat is focussed on the analysis of larger structural features of chromosomes, their correlation to genomic...
3010 days ago
- ...;de novo assemblies consist in many pieces of contiguous sequence (contigs) arranged in thousands of scaffolds instead of small numbers of chromosomes. Confirming and improving the...
2816 days ago
- ...nd, including alignments and other genomic information from multiple chromosomes. We have addressed this probl...ay Ribbon shows patterns in alignments of many reads across multiple chromosomes, while allowing detailed insp...
2758 days ago
- ...t contigs. Contigs are aligned globally (end-to-end) onto reference chromosomes, ignoring: matches not sat...ilosis (13 Mb; CANPA) and A. thaliana (119 Mb; ARATH) chromosomes, reconstructing correctly all...
2699 days ago
- Cgaln (Coarse grained alignment) is a program designed to align a pair of whole genomic sequences of not only bacteria but also entire chromosomes of vertebrates on a nominal desktop co...
2634 days ago
- ...ot.R --annotate annotations.bed Options --ideobed, i A bed file of reference contig lengths/chromosome names --heatmap, -h Fill chromosomes with normalized heatmap...
2643 days ago
splitbam: splits a BAM by chromosomes
splitbam splits a BAM by chromosomes. Using the reference sequence dictionary (*.dict), it also creates some empty BAM files if no sam record was found for a chromosome. A pair of...2628 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and plasmids). Genome annotation is a multi-level process that includes...2551 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
...ssembled sequence is in contigs longer than 101 kilobases and in scaffolds longer than 269 kilobases. Incorporating fosmid ends recovers entire chromosomes. Meraculous relies on an effi...2376 days ago
