3942 days ago
3941 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...-read sequences. Catchen et al., G3: Genes, Genomes, Genetics, 1:171-182, 2011. Full Text, Home Page Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads....3774 days ago
List of In-silico Binding Site Prediction Tools
...in proteins. The method is purely geometry-based and proceeds in two stages, labeling of grid cells with depth factors followed by a depth based clustering that uses neighbourhood infor...3738 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
----------- Gene Set Clustering based on Functional annotation GeneSCF serves as command line tool for clustering the list of genes given by th...2866 days ago
Genome Assembly Tools and Software - PART1 !!
...c regions (sequence targets) of interest. Rainbow v2.0.4 – Clustering and Assembling Short Reads, e...Rainbow package consists of several programs used for RAD-seq related clustering and de novo assembly. CA...2680 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...error-containing long sequence (e.g., ONT or PacBio reads, draft genomes) Software (Perl) https://github.com/warrenlr/LINKS/ Read clustering afcluster Clustering of reads from different genes...2365 days ago
Single Cell RNAseq data analysis tutorial !!
...incera: A Computational Pipeline for Single Cell RNA-Seq Profiling Analysis https://research.cchmc.org/pbge/sincera.html SC3 – consensus clustering of single-cell RNA-Seq data...2345 days ago
List of visualization tools for network biology
...tp://tinyurl.com/navigator1/ N-Browse Interactive graphical browser for biological networks http://www.gnetbrowse.org/ NeAT Topological and clustering analysis of networks http://...2282 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
...dentification of novel genes, exons and novel splice junctions.We will highlight the use of Strand NGS features such as PCA, sample correlation, clustering, Venn diagrams, CVA, UMI supp...2258 days ago