jackalope: A swift, versatile phylogenomic and high-throughput sequencing simulator
jackalope simply and efficiently simulates (i) variants from reference genomes and (ii) reads from both Illumina and Pacific Biosciences (PacBio) platforms. It can eit...1758 days ago
Retrieving Taxonomic Information with R
This vignette will introduce users to the retrieval of taxonomic information with myTAI. The taxonomy() function implemented in myTAI relies o...1724 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
chromoMap provides interactive, configurable and elegant graphics visualization of chromosomes or chromosomal regions allowing users to map chromosome elements (l...1715 days ago
1704 days ago
Kalign: fast multiple sequence alignment program for biological sequences.
Kalign is a fast multiple sequence alignment program for biological sequences. Align sequences and output the alignment in MSF format: kalign -i BB11001.tfa -f msf...1660 days ago
Gooey: Turn (almost) any Python command line program into a full GUI application with one line
Turn (almost) any Python command line program into a full GUI application with one line The easiest way to install Gooey is via pip pip install Gooey Altern...1660 days ago
Seq: A high-performance, Pythonic language for bioinformatics
...ble syntax and a host of domain-specific features and optimizations, Seq makes writing high-performance genomics software as easy as writing Python code, and achieves performance com...1638 days ago
RepeatModeler2: automated genomic discovery of transposable element families
...nome annotation toolkit that will enhance the identification and study of TEs in eukaryotic genome sequences. RepeatModeler2 is available as source code or a containerized package un...1629 days ago
SeQuiLa-cov: A fast and scalable library for depth of coverage calculations
...enchmarking/benchmarking.html#depth-of-coverage. An archival copy of the code and supporting data is also a...Project home page: http://biodatageeks.org/sequila/ • Source code repository: https://gith...1616 days ago
1609 days ago