1115 days ago
Comment on "URMAP, an ultra-fast read mapper"
map command Maps unpaired reads to a reference genome. The reference genome is stored as a UFI file created by the make_ufi command. The original FASTA file for...1297 days ago
Comment on "Sibelia: A comparative genomics tool"
...mporary files (see section "Directory for temporary files"). Above commands will run "Sibelia" on the fi...dified compressed de Bruijn grahp for k=25, one can use the following command line: Sibelia -k run.stag...1298 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...check if things are ok before we proceed! The command reapr facheck <assemb...s good output, since the only output from the command is the potential problems wit...blies based on the raw data for this. Run the command reapr perfectmap to...1350 days ago
Comment on "Setting up autoConTAMPR !"
...e -- OKRunning make testPERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "...e -- OKRunning make testPERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "...1455 days ago
Comment on "List of gene ontology software and tools"
GeneSCF serves as command line tool for clustering list of genes based on functional annotation (Geneontology, KEGG, REACTOME and NCG). This tool requires gene list in the form of Entrez Gene IDs or Official gene symbols as a input. http://genescf.kandurilab.org/1505 days ago
Comment on "Installing Bio::SCF perl module"
In Ubuntu, you can try the following command to install perl packages: sudo apt-get install libbio-scf-perlsudo apt-get install -y bioperlsudo apt-get install -y libstatistics-distributions-perlsudo apt-get install -y libterm-progressbar-simple-perl1524 days ago
1533 days ago
Comment on "How to set up SSH on Ubuntu 18.04"
...tallation was successful and SSH service is running type the following command which will print the SSH serv...ddress, login to remote machine by running the following ssh command: ssh user@ip If you don&rsq...1569 days ago
Comment on "Indexcov: fast coverage quality control for whole-genome sequencing"
Installing goleft ➜ falconUnzip_assembly bioconda install goleftzsh: command not found: bioconda➜ falconUnzip_assembly conda install goleft Solving environment: done ## Package Plan...2089 days ago