genoPlotR - plot gene and genome maps project!
genoPlotR is a R package to produce reproduci...home-made tabular files. Features Linear representation of several s...ments of the same segment on the same line, separated by a // Automatic...Add a global scale or a scale to each line Use user-defined graphical f...1993 days ago
OrthoANI: An improved algorithm and software for calculating average nucleotide identity
...ical User Interface that allow researchers to calculate OrthoANI values between genomes of interest without unfamiliar Command Line Environments. Moreover, the OAT_cmd command-line software can be integrated in...1993 days ago
KEGG Mapper – Reconstruct Pathway
Reconstruct Pathway is a KEGG PATHWAY mapping tool that assists genome and metage...e organisms) annotated with KEGG Orthology (KO) identifiers or K numbers. Each line of the gene list contains the...1993 days ago
1988 days ago
Versatile genome assembly evaluation with QUAST-LG
QUAST-LG is an extension of QUAST intended for evaluating large-scale genome assemblies (up to mammalian-s.... Run QUAST as usual and do not forget to add ‐‐large option to your comm...1984 days ago
NanoPack: visualizing and processing long-read sequencing data
...ac OS and the MS Windows 10 subsystem for Linux and are available as a graphical user interface, a web service at http://nanoplot.bioinf.be and command line tools.1980 days ago
1963 days ago
MCAT: Motif Combining and Association Tool
This is a pipeline for finding motifs in fasta files.It can be run from the command line as follows: usage: orange_pipeline_refine.py [-h] [-w W] [--nmotifs NMOTIFS] [--iter ITER] [-c C][-s S] [-d] [-ff] [-v V]positive_seq neg...1961 days ago
1961 days ago
SvABA: Genome-wide detection of structural variants and indels by local assembly
...he genome. The default is to use only clipped, discordant, unmapped and indel reads, although this can be customized to any set of reads at the command line using VariantBam ru...1953 days ago