Results for "Comparative Genomes"
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High-throughput genomics has revolutionized biological research, however, while the number of sequenced genomes grows by the day, quality ass...2924 days ago
- segemehl is a software to map short sequencer reads to reference genomes. Unlike other methods, segemehl is able to detect not only mismatches but also insertions and deletions. Furthermore, segemehl i...
2924 days ago
- Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of..., Hayashi T, Itoh T, “Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun sho...
2921 days ago
- This is the andi program for estimating the evol...ary distance between closely related genomes. These distances can be used...ly infer phylogenies for big sets of genomes. Because andi does not comput...es even up to thousands of bacterial genomes. This readme covers all nece...
2921 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are...i-core architectures. The run-time for aligning two bird-size genomes (~1.2 Gb) is around two days...2921 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-genera...generated data (sequencing technologies, low-coverage and exome) in the 1000 Genomes Project. To provide highly ac...2913 days ago
PolyPhen-2: Prediction of functional effects of human nsSNPs
PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations.2911 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requirement for a range of...thout relying on prior knowledge, but these do not scale to arbitrarily large genomes and arbitrarily large phyloge...2886 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/delet...
2880 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Ill...before 60nt. A5-miseq assumes it is assembling homozygous haploid genomes. Use a different assembler for metagenomes and heterozygous diploid or p...
2824 days ago
