#Block alignment: New representation and comparison #method to study #evolution of #genomes https://www.sciencedirect.com/science/article/pii/S0888754318304087
#CheckM provides a set of tools for #assessing the #quality of #genomes recovered from isolates, single cells, or #metagenomes. http://ecogenomics.github.io/CheckM/
Identifying #repeats and #transposable elements in sequenced genomes: how to find your way through the dense forest of programs https://www.nature.com/articles/hdy2009165 #repeats #TEs
Beginner’s guide to #comparative #bacterial #genome analysis using next-generation sequence data https://microbialinformaticsj.biomedcentral.com/articles/10.1186/2042-5783-3-2
#Comparative #genome analysis usingsample-specific #string #detection in accurate #longreads https://academic.oup.com/bioinformaticsadvances/advance-article/doi/10.1093/bioadv/vbab005/6290003