2633 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to compare the amino-acid sequences of different proteins, or the nucleotide sequences of different pieces of DNA...2475 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...a general purpose sequence comparison tool providing the following benefits: PLAST is a high-performance sequence comparison tool designed to compare two sets of sequences (query...2346 days ago
LRCstats: Long Read Correction Statistics
...ng reads. Of course, some long read correction algorithms are better than others, and developers of long read correction algorithms will wish to compare their algorithm with others c...2311 days ago
Scallop: reference-based transcriptome assembler for RNA-seq
...d coverage deviation minimization. Scallop paper has been published at Nature Biotechnology. The datasets and scripts used in this paper to compare the performance of Scallop an...2188 days ago
D-GENIES: A tool for Dotplot large Genomes in an Interactive, Efficient and Simple way
D-GENIES – for Dotplot large Genomes in an Interactive, Efficient and Simple way – is an online tool designed to compare two genomes. It supports large genome and you can interact wit...2154 days ago
HiGlass: a tool for exploring genomic contact matrices and tracks.
...matrices and tracks. Please take a look at the examples and documentation for a description of the ways that it can be configured to explore and compare contact matrices. To load pri...2154 days ago
pbalign: maps PacBio reads to reference sequences and saves alignments to a BAM file
...s aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. The output Compare HDF5 file will be compatible...2172 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...Plotting tools. Contains several plotting tools to visualise K-mer and compare distributions. The following...from a matrix created with the "comp" tool. Typically this is used to compare two K-mer hashes produced by...1980 days ago
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
ANItools is a software package written by PERL scripts that can be run in a Linux/Unix system. If you want to compare bacterial genomes and calculate their average nucleotide identity...1998 days ago