R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses ge...e=commandArgs(TRUE)[3] library(genoPlotR) #Read fastANI output comparison...1115 days ago
2113 days ago
Installing ggplot2 and its dependencies on Ubuntu !
...map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Comparison.cpp -o Comparison.o g++ -std=gnu++11 -I/usr/sh...1564 days ago
Pack a perl program with their dependencies on Ubuntu !
...s !!This group is dedicated to Comparative genomics ... Dramatic results have emerged from the rapidly developing field of comparative genomics. Comparison of the fruit fly genome with...1525 days ago
List of string comparison algorithms !
String comparison: Levenshtein Distance Damerau-Levenshtein Distance Jaro Distance Jaro-Winkler Distance Match Rating Approach Comparison Hamming Distance More at https://jellyfish.readthedocs.io/en/latest/comparison.html996 days ago
Raku script to find overlaps between two bed files !
...say "Overlap found:"; say "File 1: $line1"; say "File 2: $line2"; say ""; } } } say "Comparison completed.";...108 days ago
Perl script to find overlaps between two bed files !
#!/usr/bin/perl use strict; use warnings; # Check if the correct number of arguments are provided if (@ARGV != 2) { die "Usage: $0 file1.bed file2.bed\n"; } # Read the contents of the two BED files my $file1 = shift @ARGV; my $file2 = shift @ARGV; open my $fh1, '108 days ago