Seq: A high-performance, Pythonic language for bioinformatics
Seq is a programming language for computational genomics and bioinformatics. With a Python-compatible syntax and a host of domain-specific features and optimizations, Seq...ormance genomics software as easy as writing Python code, and achi...1635 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML language designed to describe phylogenetic trees (or networks) and associated data. PhyloXML pro...as taxonomic information, gene names and identifiers, branch lengths,...rability between various applications and data...1620 days ago
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Machine learning training and courses in bioinformatics !
Machine learning techniques have been successful in analyzing biolo...use of their capabilities in handling randomness and uncertainty of data n...arkov models, and Bayesian networks) for biological sequence analysis and systems biology. Other machine learning t...uch as Naive bayes, neural networks and SVMs...1597 days ago
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gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output
gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines. They compare the performance...sher against two other published gap filling tools PBJelly and GMcl...1573 days ago
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Nextflow: Data-driven computational pipelines
Nextflow enables scalable and reproducible scientific workflows using software containers. It allows th...on scripting languages. Its fluent DSL simplifies the implementation and the deployment of complex parallel and reac...1546 days ago
QuartataWeb: user-friendly server developed for polypharmacological and chemogenomics analyses.
Data on protein-drug and protein-chemical interactions are rap...databases such as DrugBank and STITCH. These data usual...raction. Indeed, recent studies, both computational and experimental, highlighted the...than those known in public databases; and many...1505 days ago