MinION_GC: An R script to do some QC on MinION data
Other tools focus on getting data out of the fastq or fast5 files, which is slow and computationally intensive. The benefit of this approach is that it works on...2354 days ago
AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing
AIRVF that works on flowgram, raw and mapped reads and called variants to reduce artifact-driven false variant calls. Tests on sequencing data of standard reference material showed...s when combined to conventional public pipelines and &sim...2336 days ago
CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies
CAMSA – is a tool for Comparative Analysis and Merging of Scaffold ...ssemblies, distributed both as a standalone software package and as...he MIT license. Main features: works with any number of scaffold...ained from any in silico and ...2329 days ago
2307 days ago
Protein Subcellular Localization Prediction
Assigning subcellular localization to a protein is an...elucidating its interaction partners, function, and potential role(s) in the cellular machinery. Computational tools offer an attractive complement to time-consuming and labo...2267 days ago
Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of it...2255 days ago
repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric
Genome scaffolding is a classical challen...ds). The join between two contigs A and B is considered correct if:...are genome repeats. The previous standard for evaluation (Hunt et al., Genome Biology, 2014) did not take...links. https://github.com/mandricig...2246 days ago
Jvarkit : Java utilities for Bioinformatics
Collection of Java tool kits for bioinformatics works: Jvarkit : Java utilities for Bioinformatics2167 days ago
2192 days ago
Circlator: automated circularization of genome assemblies using long sequencing reads
A tool to circularize genome assemblies. The algorithm and benchmarks are described in the Genome Biology manuscript. Citation:...ies using long sequencing reads", Hunt et al, Genome Biology...2191 days ago