Biotite: A general framework for computational biology
The package is open source and freely available at GitHub (https://...the beginners in programming and computationally efficient beca...f the implementation of Numpy and Cython. Biotite consists...r databases such as RCSB PDB, and application provide...1975 days ago
1962 days ago
EXCAVATOR: detecting copy number variants from whole-exome sequencing data
EXCAVATOR, for the detection of copy number variants (CNVs) from who...hidden Markov model algorithm and a...te EXCAVATOR on three datasets and compare the results with thre...s well as in clinical research and diagnostics. EXCAVATOR is fre...R has been published on Genome Biology (http://genomebiology....1958 days ago
Osprey: Network Visualization System
Osprey is a software platform for the visualization of complex biological interaction networks. Osprey builds data-rich graphi...Visualization System." Genome Biology 2003 4(3):R22 [Genome Biology] [PDF] [PubMed] and supp...1942 days ago
1941 days ago
iRNAD: a computational tool for identifying D modification sites in RNA sequence
iRNAD, for identifying D modification sites in RNA sequence. In this predictor, the RNA samples derived from five species were encoded by nucleotide chemical property and nucleotide density. Support vector machine was utilized to perform the classification. http://lin-group.cn/server/iRNAD/1826 days ago
MGERT: Mobile Genetic Elements Retrieving Tool
MGERT is a computational pipeline for easy retrieving of MGE's coding sequences of a particular family from genome assemblies. MGERT utilizes several established bioinformatic tools combined into single pipeline which hides different technical quirks from an inexperienced user.1824 days ago
dnaPipeTE: a pipeline designed to find, annotate and quantify Transposable Elements
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Element...genomes since it does not require genome assembly and works on...1737 days ago
Apollo: a sequence annotation editor
The well-established inaccuracy of purely computational methods for annotating genome sequences...experts to refine these approximations by viewing and independently evaluating the...ng curators to inspect genome annotations closely and edit...1723 days ago
Bioinformatics web development course
This web development course, targeted at Biology and Bioinformatics students, aims at teaching from s...needed to setup a fully working Linux web server and to develop and deploy web app...ons, objects, regular expressions, files reading and mani...1651 days ago