Results for "Computational RNA Biology"
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RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew Univers...ruction of transcriptomes from RNA-seq data. Trinity combines th...ly to process large volumes of RNA-seq reads. Trinity partitions...o: Inchworm assembles the RNA-seq data into the unique sequ...ull-length transcripts for alternative...2969 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which is...ment files Visualizing data in a genome browser RNA-Seq De novo transcript dis...stering of large expression datasets (microarray or RNA-Seq...2935 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial...are pipeline for identifying genomic features (i.e., protein-encoding genes and RNA) an...2934 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (it produces local pairwise al...paced seeds that enable to search more fuzzy repeats, as non-coding DNA/RNA. An...2929 days ago
- Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types o...ata in this way is often required: Reads from small-RNA sequencing contain the 3&rsqu...r sequence. Poly-A tails are useful for pulling out RNA fro...
2918 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the c...2918 days ago
- gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. http://gkno.me/how-to/install.html http://gkno.me/software.html
2911 days ago
- Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genome...It's recommended for most workflows, including those for genomic resequencing, RNA-Seq...
2911 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise t...QC step Blaxter Lab, Institute of Evolutionary Bio...3-10-01 to Frontiers in Bioinformatics and Computational Biology special issue : Quality asses...
2887 days ago
- statistical analysis and visulization of functional profiles for genes and gene clust...for comparing biological themes among gene clusters.” OMICS: A Journal of Integrative Biology, 16(5), pp. 284-287.Installat...
2884 days ago
