Results for "Computational Tools"
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v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome alignment...ctus/bin to your PATH environment variable. In order to run the included tools (ex hal2maf) in the submodule...2676 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
...often based on whole-genome alignments to elucidate structural differences arising from insertions, deletions or from rearrangement events. Computational tools that can visualize genome ali...2675 days ago
- Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intras...ion detection, and phylogenetic trees. Tools Parsnp - Core-genome...of alignments, trees and variants HarvestTools - Archiving and postproc...
2662 days ago
FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologou...n thousands of sequences using a randomized inference algorithm to reduce the compu...2656 days ago
fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE version 2, a pipeline for running Chromo...romoPainter. Download from the Downloads page. AdmixturePainting, A set of R tools to inmterpret the results of...2649 days ago
- Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic...n be conducted by combining multiple bedtools operations on the UNIX comman...
2638 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017 ORLANDO, USA, Oct 17, 2017/ PRNewswire/ Stra...nostics and clinical genomic data interpretation using a strong foundation of compu...2397 days ago
FinisherSC: a repeat-aware and scalable tool for upgrading de novo assembly using long reads
FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.2635 days ago
splitbam: splits a BAM by chromosomes
splitbam splits a BAM by chromosomes. Using the reference sequence dictionary (*....of 'mock' SAM-Records can also be added to those empty BAMs to avoid some tools (like samtools) to crash. Usage java -jar...2634 days ago
- A computational pipeline for identifying single-base substitutions between two closely related genomes without the help of a reference genome. DIAL works even when the...
2633 days ago
