Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the diff...lowing are the comprehensive list of visualization tools for biological pathways: BiN...tal data to them http://tinyurl.com/vitapad/ Web tools for pathways ArrayXPath ...2285 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundamen...l biological functions. In this section we include tools that can assist in prediction of interaction sites on protein surface and tools for predicting the structure...2200 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different tools including alignment, RNA-Seq,...pe based Input: BAM- uses BAMtools API to parse Reference genom...nput: pileupformat (Maq or Samtools) Output: SV-M Descri...and non-coding variants; Four tools: VAT (Variant annotation tool...2907 days ago
2912 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scient...y Open Software Suite (EMBOSS) includes some basic tools for finding tandem repeats an...ere are many on-line services providing the EMBOSS tools, for example: Wageningen B...2209 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
----------- Gene Set Clustering based on Func...e advantage of using GeneSCF over other enrichment tools is that, it performs enrichme...ng source databases. With command-line versions of tools, as you know you can run mult...2870 days ago
2867 days ago
Genome Assembly Tools and Software - PART1 !!
...our assembly. For the sake of computational memory saving and convenience...re list many genomle assembly tools here. We mainly reported for the asse...for benchmarking DNA assembly tools, based on 3rd generation sequencers....-end data HaploClique is a computational approach to reconstru...2684 days ago
Awesome perl frameworks, libraries and software - PART 1
...ier skx/sysadmin-util - Tools for Linux/Unix sysadmins. pe...ns, macros, ... noxxi/p5-ssl-tools - various standalone per...n Simplenote tobert/perl-ssh-tools - A more capable DSH / c...useful documentary forms xen-tools/xen-tools - xen-tools is...2488 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq...Web service http://taxonomer.iobio.io/ Other d2-tools Word-based (k-tuple) compari...Software (Python/R) https://code.google.com/p/d2-tools/ VirHostMatcher Prediction...2369 days ago