Useful Publications and Websites for Deep Sequencing Data Analysis
...uman genome in less than 6 days using 54 Gb of RAM and a 123-processor compute cluster for calculation of an...Genome Biol 11(8):R86, 2010 PubMedCentral Galaxy Cloudman: Delivering compute clusters. BMC Bioinformatics...3789 days ago
List of In-silico Binding Site Prediction Tools
...STp : http://sts.bioengr.uic.edu/castp/ Computed Atlas of Surface Topography....jsp Active Site Prediction of Protein server computes the cavities in a given prot...s. MolAxis handles two distinct scenarios: It computes channels that connect a sing...3753 days ago
Apps for Busy Bioinformatics Researchers !!!
...erarchical) system is used to identify all published molecular time estimates bearing on the divergence of two chosen organisms, such as species, compute summary statistics, and prese...3551 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...; written in C++, used on Linux based and Mac computers (not tested in windows) In...arts from genotype likelihoods that have been computed from other tools (ex. Samtoo...-sample genetic covariance matrix needs to be computed; multiple types of input; si...2918 days ago
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Source Code and Pseudo Code !!
...eturn ....; Return; When; Always use scope terminators for loops and iteration. As verbs, use the words Generate, Compute, Process, etc. Words such as set, reset, increment, compute, calculate, add, sum, multipl...2668 days ago
Tools to Predict the Impact of Missense Variants !
...cted substitutions are a natural measure of constraint that reflects the strength of past purifying selection on the element” phyloP“Compute conservation or acceleration...2213 days ago
LINKS scaffolder bloomfilter setting !
...-e error (%) allowed on -d distance e.g. -e 0.1 == distance +/- 10% (default -e 0.1, optional) -l minimum number of links (k-mer pairs) to compute scaffold (default -l 5, optio...2160 days ago
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