2600 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation of those intervals from their observed...nomes are currently sequenced to high precision, our theoretical analyses and computer...2554 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes assemblies in real-time with O...equencing. The pipeline can run on a computing cluster as well as on a laptop computer...2549 days ago
2515 days ago
GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphical software suite that allows users to analyse data produ...ed interface:Access your data at any time from any computer with a working internet conne...Data..'). Extensibility:Algorithm developers and computer...2505 days ago
2501 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool p...takes full advantage of recent multi-core personal computers without requiring any additi...small RAM footprint, Ready to be used on desktop computer...2357 days ago
NanoSim: nanopore sequence read simulator based on statistical characterization.
NanoSim, a fast and scalable read simulator that captures the technology-specific feat...tten in Python and R. The source files and manual are available at the Genome Sciences Centre website: http://www.bc...2340 days ago
BEAP: Blast Extension and Assembly Program
The Blast Extension and Assembly Program (BEAP) is a computer program that uses a short starting DNA fragment, often a EST or partial gene segment, as "primer", to recursively blas...2165 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single molecula sequencing (SMRT) re...or effectively de novo assemblying large genomes. For example, on a 32-thread computer...2196 days ago