npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes assemblies in real-time with Ox...sequencing. The pipeline can run on a computing cluster as well as on a laptop comput...2553 days ago
GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphical software suite that allows users to analyse data produ...ed interface:Access your data at any time from any computer with a working internet conne...Data..'). Extensibility:Algorithm developers and comput...2510 days ago
2505 days ago
Computational Genomics: Applied Comparative Genomics
The primary goal of the course is for students to be grounded in theory and leave the course empowered to conduct independent genomic analyses. We will study the leading computational and quantit...2363 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool p...takes full advantage of recent multi-core personal computers without requiring any additi...small RAM footprint, Ready to be used on desktop comput...2361 days ago
BEAP: Blast Extension and Assembly Program
The Blast Extension and Assembly Program (BEAP) is a computer program that uses a short starting DNA fragment, often a EST or partial gene segment, as "primer", to recursively bla...2169 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single molecula sequencing (SMRT) rea...for effectively de novo assemblying large genomes. For example, on a 32-thread comput...2200 days ago
2196 days ago
DUPCAR: Reconstructing Contiguous Ancestral Regions with Duplications
we propose a heuristic algorithm, called DUPCAR, for reconstructing ancestral genomic orders with duplications. The m...rs by connecting genes into contiguous regions based on predicted adjacencies. Comput...2190 days ago
2188 days ago