Results for "Consensus"
Top-level pages
List of In-silico Binding Site Prediction Tools
...ased drug design. Many computational methods for the prediction of ligand-binding sites have been developed in recent decades. Here we present a consensus method metaPocket, in which t...3758 days ago
Next generation sequencing in R or bioconductor environment
...owing sample code uses the test data set from the above BayesPeak package in order to compare the results from both methods by identifying their consensus peak set. Documentation [ Pub...3639 days ago
Commercial and public next-gen-seq (NGS) software
...through 454 sequencing technology (GS20 or GS FLX). Compatible with 454, Solexa and Sanger data. Linux OS required. SEQAN - A Consistency-based Consensus Algorithm for De Novo and Ref...3533 days ago
Software packages for next gen sequence analysis
...hrough 454 sequencing technology (GS20 or GS FLX). Compatible with 454, Solexa and Sanger data. Linux OS required. * SEQAN - A Consistency-based Consensus Algorithm for De Novo and Ref...3257 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...VAR SOAPsnp Description: based on Baye’s theorem; calls consensus genotype Input:SOAP short re...atabase 70 Input: Gene Name, Ensembl transcript ID, Ensembl Gene ID, Consensus CDS, RefSeq Peptide ID, or ow...2923 days ago
Genome Assembly Tools and Software - PART1 !!
...thod. It applies an align-layout-consensus structure, consisting of thre...emble these frequent k-mers into consensus repeats (in the form of conti...Bruijn graph and Overlap-Layout-Consensus (OLC) approaches. MaSuRCA can...ry contact Mario Caccamo) is for consensus genome assembly, and cortex_v...2700 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...n technique MinHash Software (Java) https://github.com/marbl/MHAP Miniasm Assembler of long noisy reads (SMRT, ONT) using the Overlap-Layout Consensus (OLC) approach without the ne...2386 days ago
Single Cell RNAseq data analysis tutorial !!
...tr/BPSC Sincera: A Computational Pipeline for Single Cell RNA-Seq Profiling Analysis https://research.cchmc.org/pbge/sincera.html SC3 – consensus clustering of single-cell RNA...2365 days ago
Tools for bacterial whole genome annotation
...i) IMAGE uses paired-end reads to extend contigs and close gaps within the scaffolds; (iii) ICORN for identifying and correcting small errors in consensus sequences and; (iv) RATT for...2346 days ago
Run miniasm assembler on nanopore reads !
... minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates...2345 days ago
