Simka and SimkaMin are comparative metagenomics method dedicated to NGS datasets
...l classical ecological distances between them. Developper: Gaëtan Benoit, PhD, former member of the Genscale team at Inria. Contact: claire dot lemaitre at inria...1780 days ago
chromosight: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
Python package to detect chromatin loops (and other patterns) in Hi-C contact maps. Stable version with pip: pip3 install --user chromosight Stable version with conda: conda...1519 days ago
oGNM:Conformational dynamics based on contact topology in a coarse-grained presentation
...el (GNM) is a powerful tool to sample conformational dynamics based on contact topology in a coarse-grained...ironment’ (1). The ‘environment’ here can be crystal contacts defined in structures solved...854 days ago