2156 days ago
Cerulean: A hybrid assembly using high throughput short and long reads
Cerulean extends contigs assembled using short read datasets like Illumina paired-end reads using long reads like PacBio RS long reads. Cerulean v0.1 has been implemented wit...2156 days ago
HALC: High throughput algorithm for long read error correction
...ion. HALC aligns the long reads to short read contigs from the same species with a...uding its true genome region’s repeats in the contigs sufficiently similar to it (s...an thus result in 11.4-60.7% longer assembled contigs than the existing algorithms.2153 days ago
PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++.
...the strategy that it implements for genome assembly: PRICE uses paired-read information to iteratively increase the size of existing contigs. Initially, those contigs can be individual reads from...2150 days ago
npScarf: real-time scaffolder using SPAdes contigs and Nanopore sequencing reads
npScarf (jsa.np.npscarf) is a program that connect contigs from a draft genomes to generate sequences that are closer to finish. These pipelines can run on a single laptop for microbi...2150 days ago
2150 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
...genomes. This tool aims to improve the completeness of both protein-coding and non-coding genes. After this tool was applied to scaffolding human contigs, the structures of both prote...2149 days ago
2147 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
...performance were compared with PBcR-Mhap pipeline, FALCON and Canu(v1.3) in five real datasets. The quality of assembled contigs produced by MECAT is the same...2181 days ago
2169 days ago