Results for "Coordinates"
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...n all or most of the genomes), join neighboring (adjacent in genomic coordinates, in each genome) cliques to f...ents. The cliques from each run are used to output the exact genomic coordinates of anchors within each orthol...2648 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
...genes found within complete genome sequences. As input, DAGchainer accepts a list of gene pairs with sequence homology along with their genome coordinates. Using a scoring function whi...2636 days ago
Dot, an interactive viewer for genome-genome comparison
...st commonly used software method for aligning genome assemblies. A quick script called DotPrep.py converts the delta file to a more streamlined coordinates file with an index that enabl...2305 days ago
CrossMap: a program for convenient conversion of genome coordinates
...program for convenient conversion of genome coordinates (or annotation files) between...CrossMap is designed to liftover genome coordinates between assemblies. It’s...recommend using CrossMap to convert genome coordinates between species....2168 days ago
- ...mes. This tool will do the following steps: Step 1. Run mugsy to get multiple sequence alignment results. Step 2 & 3. Extraction of the Coordinates of Core Blocks, Construction...
2048 days ago
- Alluvial diagram is a variant of a Parallel Coordinates Plot (PCP) but for categorical variables. Variables are assigned to vertical axes that are parallel. Values are represented with...
1690 days ago
CrossMap: program for genome coordinates conversion between different assemblies
CrossMap is a program for genome coordinates conversion between different assemblies (such as hg18 (NCBI36) <=> hg19 (GRCh37)). It supports commonly used...833 days ago
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