2170 days ago
Pollux: platform independent error correction of single and mixed genomes
...rs introduced by Illumina, Ion Torrent, and Roche 454 sequencing technologies and can be applied to single- or mixed-genome data. In addition to correcting substitution errors, we locat...2547 days ago
Genome Assembly Tools and Software - PART2 !!
...utomatically high quality sequence by ordering contigs, closing gaps, correcting sequence errors and transferr...ontains programs that support mapping of reads to a reference genome, correcting sequencing errors by locally...2690 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...titative transcript expression profiling. Łabaj et al, Bioinformatics 27:i383 - i391, 2011 Full Text Improving RNA-Seq expression estimates by correcting for fragment bias. Roberts et...3784 days ago
Tools for bacterial whole genome annotation
...es of gaps between them; (ii) IMAGE uses paired-end reads to extend contigs and close gaps within the scaffolds; (iii) ICORN for identifying and correcting small errors in consensus seq...2336 days ago
3889 days ago
Tadpole is 250x faster than SPADes assembler !
...halt correction in that direction. rbi=t (requirebidirectional) Require agreement from both directions when correcting errors in the middle part of...980 days ago
Tags: Bioinformatics, LoRMA, Tool, Correcting, Errors, Reads, Sequencing
2170 days ago
CoLoRMap: Correcting Long Reads by Mapping short reads
Second generation sequencing technologies paved the way to an exceptional increase in the number of sequenced genomes, both prokaryotic and eukaryotic. However, short reads are difficult to assemble and often lead to highly fragmented assemblies. The recent developments in long reads sequencing m...Tags: CoLoRMap, Correcting, Long, Reads, Mapping, short, reads, pacbio
2089 days ago