Most Commonly used Awk by Bioinformatician
...")>0)l[$1]=$0}$1 in l{print $0"\t"l[$1]}' file2.txt > output.txt count number of occurrence of colum...he first occurrence (uniq): awk '!($2 in l){print;l[$2]=1}' input.txt count different words (wc): awk '{...3920 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ly expressed genes from RNA-seq data. Wang et al., Bioinformatics. 26(1):136-8. 2010 PubMed DEseq: Differential expression analysis for sequence count data. Anders and Huber, Genom...3787 days ago
Next generation sequencing in R or bioconductor environment
...P-seq processing pipeline SPP Tutorial MACS SIPeS RNA-Seq Analysis Counting Reads that Overlap with An...alignments against a reference genome. The two main functions for read counting provided by this infrastru...3632 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...import the sample data in FASTA, FASTQ or tag-count format. In addition, prealign...ows for testing between variants and traits; accounts for confounding factors ex....of noncoding elements, modeling their mutation count; Dependent on C++ and BEDtool...2917 days ago
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Source Code and Pseudo Code !!
...rint "failed" endif 2. Set total to zero Set grade counter to one While grade counter is less than or equal to te...are initialized as part of their declarations. E.g. "initialize count to zero" is a good entry.Func...2667 days ago
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