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Results for "Coverage"

Wire posts

• • Jit@jit.aber

  

  Plot the coverage in R http://cnr.lwlss.net/SeqCoverage/ #BAM #SAM #R #NGS #Plot

  2849 days ago

• • Hardeep Kaur@hardeep

  

  Genome and coverage https://rtsf.natsci.msu.edu/_rtsf/assets/File/depth%20and%20coverage.pdf #Coverage #Genome #Depth #Reads #NGS

  2723 days ago

• • Shruti Paniwala@shruti

  

  Coverage R Plot http://davetang.org/muse/2013/09/07/creating-a-coverage-plot-in-r/ #R #Plot #Genome #Image #NGS #BAM

  2750 days ago

• • Jit@jit.aber

  

  #Contiguous and #accurate de novo #assembly of #metazoan genomes with modest long read coverage https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkw654

  2625 days ago

• • Robert M Willioms@robert

  

  Plotting nice coverage graph with R https://davetang.org/muse/2013/09/07/creating-a-coverage-plot-in-r/ #R #Plot #Coverage #NGS

  2587 days ago

• • Neelam Jha@neelam

  

  splitbed to splitcov https://github.com/cyaguesa/Rscripts/blob/master/splitbed_to_splitcov.R #R #Coverage

  2562 days ago

• • Jit@jit.aber

  

  #Zero coverage regions ~/Tools/bedtools2/bin/bedtools genomecov -ibam PvsH_aln_sorted.bam -bga | awk '$4==0' > ZERO_coverage_regions.txt

  2145 days ago

• • Abhimanyu Singh@abhimanyu

  

  #Intersect your bed data with coverage $ bedtools genomecov -ibam aln.bam -bga | awk '$4==0' | bedtools intersect -a cds.bed -b - -f 1.0

  1999 days ago

• • Abhimanyu Singh@abhimanyu

  

  How to calculate the coverage for a NGS experiment https://www.ecseq.com/support/ngs/how-to-calculate-the-coverage-for-a-sequencing-experiment #NGS #Coverage

  1808 days ago

• • Abhimanyu Singh@abhimanyu

  

  Simple script to generate whole-genome coverage plots https://github.com/matted/genome_coverage_plotter #Coverage #Plot #Genome

  1796 days ago