1230 days ago
2157 days ago
2929 days ago
Retrieve NCBI GenBank records with a range of accession numbers
#!/usr/bin/perl #FILE: ncbi_search.pl #AUTH: Paul Stothard (paul.stothard@gmail.com) use warnings; use strict; use Getopt::Long; use LWP::Simple; use URI::Es...2929 days ago
A multilayer perceptron (MLP) neural network in Perl
...bourn Oct 2004 #################################################### #Tanh hidden neurons #Linear output neuron #To include an input bias create an #extra input in the train...2929 days ago
Count GC Content in nucleotide sequence with Perl
...$fasta_file") ) { print "Got a bad fasta file: $fasta_file\n\n"; exit; } unless ( open(OUT, ">$out_file") ) { print "Couldn't create $out_file\n"; exit; }...2919 days ago
2706 days ago
Extract fasta sequence from a multifasta file with coordinates
...nce )) { die "Sequence $seq not found. \n" } print ">$id\n", "$sequence\n"; } __END__ use Bio::DB::Fasta; # Create database from a directory of...2545 days ago
Download the genome from NCBI using bash script/command
#!/bin/bash # Download the genome from NCBI using command # Create a Directory mkdir genome cd genom..."$f") extension="${filename##*.}" filename="${filename%.*}" # Create a directory with appending G...2545 days ago
Download the gff files from NCBI using bash script/command
#!/bin/bash # Download the genome from NCBI using command # Create a Directory mkdir genome_gff cd g..."$f") extension="${filename##*.}" filename="${filename%.*}" # Create a directory with appending G...2536 days ago