Results for "DB"

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  • HistoneDB 2.0 – with variants

    ...al features of nucleosomes. To get started, select a histone type to explore its variants. More at http://www.ncbi.nlm.nih.gov/projects/HistoneDB2.0/index.fcgi/browse/

    2909 days ago

  • Samtools Primer !!

    ...ns    1.0: May 30, 2013: First public release on biobits.org.    1.1: July 24, 2013: Updated with Disqus Comments / Feedback section.   ...

    2889 days ago

  • TEannot

    We advise to run first the TEdenovo pipeline but it is not compulsory. We suppose you begin by running the TEannot pipeline on the example provided in the directory "db/" rather than directly on your own genomic sequences. Thus, from now on, the project name is "DmelChr4".  

    2832 days ago

  • Ka, Ks and Ka/Ks calculations

    ...ased genome-level Ka/Ks computation pipeline developed and based on programs from four widely used packages: BLAT, BLASTALL (including bl2seq, formatdb and fastacmd), PAML (includin...

    2821 days ago

  • OPERA : Optimal Paired-End Read Assembler

    ...Oxford Nanopore). The manuscript describing the new features and algorithms is available at Genome Biology. We look forward to getting your feedback to improve it further....

    2811 days ago

  • BBMap help

    ...BBMap.sh has a length cap of 6kbp. Reads longer than this will be broken into 6kbp pieces and mapped independently. More at https://www.biostarhandbook.com/tools/bbmap/bbmap-help...

    2780 days ago

  • DBT India

    Latest announcement on DBT India.  Calls Events Projects Jobs  

    2724 days ago

  • Standardized velvet assembly report

    ...enerate alignments against a reference genome). If using BLAT, add faToTwoBit,gfClient,gfServer to your PATH. If using BLAST, add blastall and formatdb. Edit permute.sh to your l...

    2720 days ago

  • SpeedSeq

    A flexible framework for rapid genome analysis and interpretation C Chiang, R M Layer, G G Faust, M R Lindberg, D B Rose, E P Garrison, G T Marth, A R Quinlan, and I M Hall. SpeedS...

    2678 days ago

  • BioDownloader

    ...Downloader has a built-in repository containing the settings for common bioinformatics file-synchronization needs, including the Protein Data Bank (PDB) and National Center for Biot...

    2641 days ago