2103 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
Choosing whether to use second or third generation sequencing platforms can lead to trade-offs between accuracy a...ng read and uses this to correct errors in these reads. Using datasets from two DNA-s...2097 days ago
SimLoRD: A read simulator for third generation sequencing reads
SimLoRD is a read simulator for third generation sequencing reads and is currently focused on the Pacific Bioscie...mined in four ways: drawing from a log-normal distribution (typical for genomic DNA),...2096 days ago
LRCstats: a tool for evaluating long reads correction methods
LRCstats is an open-source pipeline for benchmarking DNA long read correction algorithms for long reads outputted by third generation sequencing technology such as machines produc...2096 days ago
CBS Comparative Microbial Genomics group - BioTools download page
...em alongside any other operating system. Source codes for all programs are provid...The analyses include 16S rRNA phylogeny, basic DNA and codon statistics, proteom...mparisons using BLAST and graphical analyses of DNA structures. Paper: ...2095 days ago
2045 days ago
RopeBWT2: Incremental construction of FM-index for DNA sequences
RopeBWT2 is an tool for constructing the FM-index for a collection of DNA sequences. It works by incrementally inserting one or multiple sequences into an existing pseudo-BWT position by...2032 days ago
BLAST options, setting and defaults
BLAST stands for Basic Local Alignment Search Tool and was developed by Altschul et al. (1990) and significantly...It is a very fast search algorithm that is used to separately search protein or DNA d...1986 days ago
genoPlotR - plot gene and genome maps project!
genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows t...e-made tabular files. Features Linear representation of several segments of DNA...1984 days ago
FGENESH - Program for predicting multiple genes in genomic DNA sequences
FGENESH is the fastest (50-100 times faster than GenScan) and most accurate gene finder available - see the figure and the table below. In recent rice genome sequencin...1975 days ago