2924 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which...uch as HOMER. Setting up your computing environment Retrieving and storing sequencing files (your own data or...2924 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or O...2907 days ago
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
Smash is a completely alignment-free method/tool to find and visualise genomic rearrangements. The detection is based on conditional exclusive compression, namely us...2923 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (i...he heuristic pairwise local alignment tools for DNA sequences (FASTA, BLAST, PATT...ble to search more fuzzy repeats, as non-coding DNA/RNA. A...2918 days ago
2907 days ago
2907 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish bu...ntification of structural variation in a genome re-sequencing experiment. Hagfish requires...2899 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-s...mapping second and third-generation sequencing reads to a reference genome....ign reads generated by all the major sequencing technologies, including Illum...mappings for all the generated data (sequencing technologies, low-coverage an...2899 days ago
2899 days ago