2938 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...al analysis with Cufflinks Differential expression analysis with R/Bioconductor Clustering of large expr...rray Basic analysis of Affymetrix Gene Expression Arrays using R/Bioconductor General Tips for Data...2930 days ago
mrFAST: Micro Read Fast Alignment Search Tool
...a read mapper that is designed to map short reads to reference genome with a special emphasis on the discovery of structural variation and segmental duplications. mrFAST maps short...2930 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
...has become desirable to build a version of RAST that is both customizable and extensible. In this paper, we describe the RAST tool kit (RASTtk), a modular version of RAST that enabl...2929 days ago
2916 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (it produces local pairwise alignments). Like most of the heuristic pairwise...2924 days ago
Stand-alone programs for Bioinformatician
...use, built specifically for a Linux 64-bit machine. For help on the bigBed and bigWig applications see:http://genome.ucsc.edu/goldenPath/help/bigBed.htmlhttp://genome.ucsc.edu/goldenPath/help/bigWig.html...2904 days ago
2893 days ago
2893 days ago
2881 days ago