Results for "DWIM Perl"
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Generic Genome Browser Version 2: A Tutorial for Administrators This is an exten...GBrowse as a server. This tutorial assumes that you have successfully set up Perl, GD, BioPerl and the other GBrowse depende...2992 days ago
- AccNET is a Perl application that presents a new way to study the accessory genome of a given set of organisms. Using the proteomes of these organisms, AccNET create a bipar...
2761 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visu...y assessment and control of high-throughput sequencing data). It contains bash/perl/R scripts for running the ana...
2877 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools f...ipulate NGS data as compared to the other command line tools such as grep, sed, perl etc. Furthermore, having a co...2868 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the...
2861 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in you...type install.packages("ggplot2","proto","xtable")) Perl Optional: BLAT or BLAST...the kmer, cvCut, expCov, and other flags To Run: perl fastaAllSize mysequences.fa &...2698 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al., 2004) packages. The...2688 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
MeGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs) Description MeGAMerge is a perl based wrapper/tool that can a...2688 days ago
Many-Core Engine (MCE) for Perl example
MCE spawns a pool of workers and therefore does not fork...ns; :manager, :worker, and :getter. REQUIREMENTS Perl 5.8.0 or later. PDL::IO::Stor...sted at GitHub. https://github.com/marioroy/mce-perl https://github.com/mario...2645 days ago
- The official documentation of the Perl 6 programming language is now publ...built-in subroutines and methods. Perl 6 ProgramsA collection of documents describing how to run the Perl 6 executable program and othe...erl 5 language can be found on the Perl 5 documentation website. Bio...
2642 days ago
