Results for "DWIM Perl"
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JBrowse: Embeddable genome browser built completely with JavaScript and HTML5
JBrowse is a fast, embeddable genome browser built completely with JavaScript and HTML5, with optional run-once data formatting tools written in Perl. Headline Features: Fast,...2130 days ago
- VCFtools contains a Perl API (Vcf.pm) and a number of Perl scripts that can be used to per...rsecting, complements, etc. The Perl tools support all versions of...inly with diploid data, but the Perl tools aim to support polyploi...http://vcftools.sourceforge.net/perl_module.html
2091 days ago
FinisherSC:a repeat-aware tool for upgrading de novo assembly using long reads
Here is the command to run the tool: python finisherSC.p...or raw_reads.fasta using the following command. perl -pe 's/>[^\$]*$/">Seg"...asta cp newRaw_reads.fasta raw_reads.fasta perl -pe 's/>[^\$]*$/">Seg"...2079 days ago
Synima: a Synteny imaging tool for annotated genome assemblies
Synima written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer, and outputs an ov...2007 days ago
- An increasing number of studies are mapping protein binding and nucleotide modificat...es along a simplified transcript model. In this work, we introduce MetaPlotR, a Perl/R pipeline for creating metag...
2001 days ago
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
ANItools is a software package written by PERL scripts that can be run in a Linux/Unix system. If you want to compare bacterial genomes and calculate their average nucleotide identity (ANI...1992 days ago
- CViT - Chromosome Viewing Tool. A collection of Perl scripts that enable quick visualizations of features on linkage groups, psuedochromosomes or cytogenetic maps. Intended for whole-genome v...
1943 days ago
- LTR_retriever is a command line program (in Perl) for accurate identification of LTR retrotransposons (LTR-RTs) from outputs of LTRharvest, LTR_FINDER, and/or MGEScan-LTR and generating non...
1932 days ago
- A computational pipeline for genome-wide detection of putative horizontal gene trans...al gene transfers. BMC Genomics. 2014. 15:717. Usage: Simply execute perl HGTector.pl, or, open GU...
1924 days ago
MFannot : a program for the annotation of mitochondrial and plastid genomes
MFannot is a program for the annotation of mitochondrial and plastid genomes MFanno...t is a program for the annotation of mitochondrial and plastid genomes. It is a PERL wrapper around a set of diver...1707 days ago
