Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of qu...ellent results both on bacterial en eukaryotic datasets. The command-line Perl script and additional files v...2680 days ago
Perl Special Vars Quick Reference
$_ The default or implicit variable. @_ Subroutine param...ss. $0 Program name. $^O Operating System name. Perl Status Info $] Old: Version and patch number of perl interpreter. Deprecated....2638 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner-perl - MySQLTuner is a script written in Perl that will assist you with you...Communicate with PhantomJS in Perl (Capybara+Poltergeist to Perl...ols is a collection of simple perl scripts which allow you to ea...2483 days ago
2483 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoal...-containing long sequence (e.g., ONT or PacBio reads, draft genomes) Software (Perl) https://github.com/warrenlr...2365 days ago
Edit distance application in bioinformatics !
There are other popular measures of edit distance, w...::Levenshtein::Damerau defaults to using a pure perl implementation, but if you've...n edit distance. Text::Fuzzy::PP is a pure perl implementation of the same in...2335 days ago
Bioinformatics Web Application Development with Perl
...dash;were easy to create with Perl and CGI. Thanks to Perl's ubiquity as a language for...faces and powerful backends. Perl is still well suited for deve...most mature of the modern top Perl web frameworks, yet it retain...ode. Because it builds on the Perl DBI, it scales everywhere fro...2316 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$\="\n"'perl -pe 'BEGIN { $\="\n" }'perl -...ch a pattern (emulate grep -c)perl -lne '$a++ if /regex/; END {p...Time) and local computer timeperl -le 'print scalar gmtime'perl...print encode_base64("string")'perl -MMIME::Base64 -0777 -ne 'pri...2296 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just about...n-python and http://bioinformaticsonline.com/discussion/view/459/python-vs-perl More resources at https...2249 days ago
Installing Bio::SCF perl module
Most Perl modules are written in Perl, some use XS (they...a somewhat recent version of Perl (version 5.8 or above). More about the basic perl module installation steps che...ar zxf Bio::SCF.tarcd Bio::SCFperl Makefile.PLmakemake testmake...2212 days ago