Results for "Data"
Bookmarks
...nted sequence from your high-throughput sequencing reads. Cleaning your data in this way is often required...in IUPAC wildcard characters. Also, paired-end reads and even colorspace data is supported. If you want, yo...2919 days ago
- ...novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data. The latest version is 1.2.4...
2919 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagf...h requires a reference sequence and a paired end re-sequencing data set. Hagfish has more power t...2912 days ago
RCircos: an R package for Circos 2D track plots
...Circos 2D track plots with R and could be easily integrated into other R data processing and graphic manipu...ation pipelines for presenting large-scale multi-sample genomic research data. It can also serve as a base...2912 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...OLiD, Roche 454, Ion Torrent and Pacific BioSciences SMRT. Indeed, MOSAIK was the only aligner to provide consistent mappings for all the generated data (sequencing technologies, low...2912 days ago
- Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
2909 days ago
- Database to Database Conversions db2db allows for conversions of identifiers from one database to other database identif...ations. To use db2db select the input type of your data, changing the input type auto...
2899 days ago
- ...ut bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, b...ct methyl-seq. In addition, methylKit can deal with base-pair resolution data for 5hmC obtained from Tab-se...
2898 days ago
- ...s) to visualise the contents of genome assembly data sets as a QC step Blaxter La...s) to visualise the contents of genome assembly data sets as a QC step. This repo...sment and control of high-throughput sequencing data). It contains bash/perl/R sc...
2888 days ago
- ...plorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (oft.... Blobsplorer is unlikely to be of use on its own as it requires contig data to be supplied in a format th...
2887 days ago
