Most Commonly used Awk by Bioinformatician
Awk is a programming language that is specifically designed for quickly manipulating space delimited data. Although you can achieve all its functionality with Perl, awk is si...3910 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...842, 2010. Publisher Website Data quality assessment, filtering...m massively parallel sequence data. Gnerre et al, PNAS 108(4): 1...expressed genes from RNA-seq data. Wang et al., Bioinformatics....toring and searching sequence data in the cloud. OConnor et al,...3777 days ago
List of bioinformatics open source projects/software.
...onent-based workflow framework for data analysis Armadillo workflow...formatics platform and graph based database built around most data av...ls https://github.com/biorails a data management system designed to...ual exploration of diverse genomic data IntAct http://www.ebi.ac.uk...3754 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...n size reductions from allele data frequencies http://www.ensam....ed model intended to simulate datasets under a very broad range...that simulates sequence-like data over large genomic regions in...osition of typical metagenome data sets http://ab.inf.uni-tuebin...3735 days ago
List of In-silico Binding Site Prediction Tools
...cket.uchicago.edu/fpop/) is a database of the protein functional...odelling.leeds.ac.uk/sb/ is a database of known ligand binding s...query protein to members of a database of protein 3D structures...ween surfaces from coordinate data supplied in a PDB file. MSPo...3741 days ago
Linux for bioinformatician !!!
...ides several powerful admin tools and utilities which will help you to manage your systems effectively and handle huge amount of genomic/biological data with an ease. The field of bi...3703 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle around massive amounts of genomics text. There are several "standardized" f...3626 days ago
Next generation sequencing in R or bioconductor environment
...cture and defines three major data containers - GRanges, GRanges...nd information and annotation data. Documentation Motif...AM formatted binary alignment data. SAM/BAM is quickly becoming...ing sample code uses the test data set from the above BayesPeak...3622 days ago
Commercial and public next-gen-seq (NGS) software
...llumina, Roche FLX and Sanger data integrating with Lasergene Se...short sequences to a sequence database, such as the human refere...Illumina, SOLiD and Roche-FLX data formats and allows the user t...ser/Alignment Viewer/Assembly Database EagleView - An informatio...3516 days ago
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