3856 days ago
RNA Sequencing Helps Identify Functional Variants from GWAS
For Alzheimer’s and other complex disorders, mining the genome for disease-associated variants is no longer the obstacle. The challenge nowadays is figuring out how the identified loci re...3824 days ago
Public Databases for Bioinformatics !
https://www.nature.com/articles/s41467-020-17155-yServer Infrast...rga: Montgomery and sensitive data 24 intel cores 256GB RAM 5...s, and other highly processed data here /mnt/data/ globally...n def write( self, data ): self.lock.acquire...use case 3 we used the ENCODE datase...1147 days ago
Bioinformatics software for biologists in the genomics era
The genome sequencing revolution is approaching a landmark figure...s, this influx of DNA sequence data has encouraged laboratory scientists to engage large datasets in comparative sequence a...of biologists to analyze large datasets by using sophisticated co...rs when analyzing genome scale datase...3794 days ago
Encode sequencing data freely available to download and use for academic means
In Encode, regulatory elements investigated via DNA hypersensitivity assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that i...3713 days ago
3660 days ago
Managing and Analyzing Next-Generation Sequence Data
Centralized Bioinformatics Core Facilities provide shared resources for the computatio...logy. Recently faced with an unprecedented flood of data generated by the next generat...ng infrastructure upgrades, staffing, and tools for data a...3646 days ago
Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering bacte...omplex, reproducible workflows for NGS microbiology data analysis. Enabling microbiolo...esearchers to conduct their own custom analysis and data m...3581 days ago
Integrative Genomics Viewer (IGV) tutorial
The Integrative Genomics Viewer (IGV) from the Broad Center allows you to view several types of data files involved in any NGS ana...loys a reference genome, including how reads from a datase...3592 days ago
COSMOS, our workflow management system for NGS data
COSMOS, our Python-based management system for implementing large-scale parallel workflows focusing on, but not restricted to, large-scale short-read "NGS" sequencing data i...3581 days ago