Most Commonly used Awk by Bioinformatician
Awk is a programming language that is specifically designed for quickly manipulating space delimited data....3907 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in...842, 2010. Publisher Website Data quality assessment, filtering...m massively parallel sequence data. Gnerre et al, PNAS 108(4): 1...expressed genes from RNA-seq data. Wang et al., Bioinformatics....toring and searching sequence data i...3774 days ago
List of bioinformatics open source projects/software.
...ttps://github.com/biorails a data management system designed to...xploration of diverse genomic data IntAct http://www.ebi.ac.uk...lysis, visualization and data-mining of large-scale genomic data...REDCRAFT software for determining tertiary protein structure gi...3751 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief de...n size reductions from allele data frequencies http://www.ensam....ed model intended to simulate datasets under a very broad range...that simulates sequence-like data over large genomic regions in...osition of typical metagenome data s...3731 days ago
List of In-silico Binding Site Prediction Tools
...odelling.leeds.ac.uk/sb/ is a database of known ligand binding s...query protein to members of a database of protein 3D structures...ween surfaces from coordinate data supplied in a PDB file. MSPo...r binding-site geometry by examining induced-fit phenomena in aldo...3738 days ago
Linux for bioinformatician !!!
Linux, free operating system for computers, provides several powerful admin tools and utilities which will help yo...to manage your systems effectively and handle huge amount of genomic/biological data w...3700 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle around massive amounts of genomics text. There are several "standardized"...3622 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as...cture and defines three major data containers - GRanges, GRanges...nd information and annotation data. Documentation Motif...AM formatted binary alignment data. SAM/BAM is quickly becoming...3619 days ago
Commercial and public next-gen-seq (NGS) software
...Illumina, SOLiD and Roche FLX data. Uses a novel Condensation As...llumina, Roche FLX and Sanger data integrating with Lasergene Se...short sequences to a sequence database, such as the human refere...Illumina, SOLiD and Roche-FLX data formats and allows the user t...ser/Alignment Viewer/Assembly Databa...3513 days ago
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