Results for "Data Mining"
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...ory saving and convenience of data inquiry, high-throughput short reads data is always initially formatted...technologies. It can combine datasets produced by different tec...wever, assembling metagenomic datasets has proven to be computat...ide Assembler for Metagenomic Data SFA-SPA is a suffix array...2680 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actions to be execut...endif 5. Larger example: NOTE: NEVER ANY DATA DECLARATIONS IN PSEUDOCODE...iscussed ahead) in your pseudocode. Do not include data d...2653 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragments. The l...herefore the fragment size distribution can be learned empirically for each WGS data s...2517 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and softwar...nbsp;- Perl binding for Redis database pplu/aws-sdk-perl -...open source repository garu/Data-Printer - colored pretty...ver for the MySQL and MariaDB databases beide/Bootimg-scripts&n...plication that serves KeePass databa...2484 days ago
- It is often necessary to import sample textbook data into R before you start worki...system. > library(gdata) ...k = loadWorkbook("mydata.xls") > df ...ocumentation > mydata = read.spss("myfile...
2483 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two different ancestors. ancestor...g of coding sequences, for discovery of new genes and (by reference to sequence data b...2456 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rap...ference sequences and RNA-seq data (k-mer based) Software (C++)...of transcripts using RNA-seq data (uses k-mers) https://c...aplogroup classifier from NGS data (k-mer based) Software (Pyth...2365 days ago
- When you have both Illumina and Nanopore data, then SPAdes remains a good o...equired for MDA (single-cell) data --meta this...quired for metagenomic sample data --rna this...bling Advanced options: --dataset <filename>...
2345 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and...the useful links: Single Cell RNAseq data analysis Tutorial A step-by-...-level analysis of single-cell RNA-seq data A step-by-step workflow for...models applied to single-cell RNA-seq data s...2345 days ago
- RNA-sequencing (RNA-seq) has a wide variety of applications, but no singl...view all of the major steps in RNA-seq data analysis, including experimen...A survey of best practices for RNA-seq data analysis RNA-seq workflow: g...EBI RNA-Seq exercise An open RNA-Seq data a...
2345 days ago
