Results for "Data Mining & Statistical Study"
Top-level pages
It is often necessary to import sample textbook data into R before you start worki...Quite frequently, the sample data is in Excel format,...;read.xls from the gdata package. It reads from a...system. > library(gdata)&...ocumentation > mydata =...2502 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which ha...or discovery of new genes and (by reference to sequence data banks)...includes the discovery of these relationships, and the study of the causes behind this pat...2475 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rapid de...om reference sequences and RNA-seq data (...ssion of transcripts using RNA-seq data...ial haplogroup classifier from NGS data (k-mer...ctly from unassembled raw sequence data...2384 days ago
- When you have both Illumina and Nanopore data, then SPAdes remains a good option f...ag is required for MDA (single-cell) data...g is required for metagenomic sample data...f assembling Advanced options: --dataset...eed) read 1 and read 2 of the MiSeq data...
2364 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s...ase studies Insufficient for studyi...useful links: Single Cell RNAseq data...el analysis of single-cell RNA-seq data A ste...els applied to single-cell RNA-seq data separate biological drivers fr...2363 days ago
- RNA-sequencing (RNA-seq) has a wide variety of applicat...ses. We review all of the major steps in RNA-seq data...mapping. A survey of best practices for RNA-seq data analys...ufflinks. EBI RNA-Seq exercise An open RNA-Seq data...
2363 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED database and ...on that is capable of processing a larger data...Assigns K numbers to the user's sequence data by BLA...virtual machine and supported by updated datab...2344 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the world...s venerable DBI module has been the focal point of database ac...n allows it to provide the same interface to huge relational datab...2334 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$\="\n"'perl -pe 'B...eperl -lne '(1x$_) !~ /^1?$|^(11+?)\1+$/ && print "$_ is prime"' # Print...rint join ".", map { (($ip>>8*($_))&0xFF)...h a regular expressionperl -ne '!/regex/ &...2315 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathem...ttp://www.arena3d.org Biana Data integration and network manag...equence, regulatory and other data http://www.biologicalnetworks....ulb.ac.be/neat/ Ondex Data integration and visualization o...VisANT Visualization, minin...2301 days ago
