3862 days ago
Public Databases for Bioinformatics !
...rga: Montgomery and sensitive data 24 intel cores 256GB RAM 5...s, and other highly processed data here /mnt/data/ globally...n def write( self, data ): self.lock.acquire...use case 3 we used the ENCODE datasets https://www.encodeproject...1152 days ago
Bioinformatics software for biologists in the genomics era
..., this influx of DNA sequence data has encouraged laboratory scientists to engage large datasets in comparative sequence a...he scripting/programming infrastructure often employed for the a...s when analyzing genome scale datasets.3799 days ago
Encode sequencing data freely available to download and use for academic means
In Encode, regulatory elements investigated via DNA hypersensitivity assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that in...3718 days ago
3666 days ago
Managing and Analyzing Next-Generation Sequence Data
...y faced with an unprecedented flood of data generated by the next generat...fficiently to the informatics and infrastructure demands. Centralized Fac...f necessary components, including infrastructure upgrades, staffing, and tools for data analyses and management ... More...3651 days ago
A Brief Bioinformatics Tutorial
...ciently for a particular protein sequence, how to blast it against the database of your choice to find ho...of the homologues you've selected and how to edit this alignment. The Structure part is about molecular visua...3649 days ago
Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering bacte...omplex, reproducible workflows for NGS microbiology data analysis. Enabling microbiolo...esearchers to conduct their own custom analysis and data mani...3587 days ago
Integrative Genomics Viewer (IGV) tutorial
The Integrative Genomics Viewer (IGV) from the Broad Center allows you to view several types of data files involved in any NGS ana...loys a reference genome, including how reads from a dataset a...3597 days ago
COSMOS, our workflow management system for NGS data
COSMOS, our Python-based management system for implementing large-scale parallel workflows focusing on, but not restricted to, large-scale short-read "NGS" sequencing data is o...3587 days ago