Results for "Data Structure"
Top-level pages
Most Commonly used Awk by Bioinformatician
Awk is a programming language that is specifically designed for quickly manipulating space delimited data. Alt...3925 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...m massively parallel sequence data. Gnerre et al, PNAS 108(4): 1...genomes using compressed data structures. Simpson & Durbin,...expressed genes from RNA-seq data. Wang et al., Bioinformatics....toring and searching sequence data in the cloud. OConnor et al, BMC...3792 days ago
List of bioinformatics open source projects/software.
...tics platform and graph based database built around most data av...ttps://github.com/biorails a data management system designed to...xploration of diverse genomic data IntAct http://www.ebi.ac.uk...determining tertiary protein structure given assigned Residual Dipol...3769 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...that simulates sequence-like data over large genomic regions in...arious known and controllable structures under the continuous migrati...osition of typical metagenome data sets http://ab.inf.uni-tuebingen.d...ution along phylogenies under structure-based substitution models htt...3750 days ago
List of In-silico Binding Site Prediction Tools
...odelling.leeds.ac.uk/sb/ is a database of known ligand binding sites...fully automated approach for structure based function prediction usi...query protein to members of a database of protein 3D structures and d...g sites matching your protein structure or inversely, for finding pro...3757 days ago
Linux for bioinformatician !!!
Linux, free operating system for computers, provides several powerful admin tools and utilities which will help y...o manage your systems effectively and handle huge amount of genomic/biological data with...3718 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle around massive amounts of genomics text. There are several "standardized" f...3641 days ago
Next generation sequencing in R or bioconductor environment
...s built upon the IRanges infrastructure and defines three major data containers - GRanges, GRanges...nd information and annotation data. Documentation Motif...AM formatted binary alignment data. SAM/BAM is quickly becoming a uni...ing sample code uses the test data set from the above BayesPeak packa...3637 days ago
Commercial and public next-gen-seq (NGS) software
...Illumina, SOLiD and Roche FLX data. Uses a novel Condensation As...llumina, Roche FLX and Sanger data integrating with Lasergene Se...short sequences to a sequence database, such as the human refere...Illumina, SOLiD and Roche-FLX data formats and allows the user t...ser/Alignment Viewer/Assembly Database...3532 days ago
- Since few years miRNA has shown to play important role in therapeutic related research...DBs and tools related with miRNA: miRNA Sequencing data analysis : http://tools....prediction.html Idea of analysing miRNA Sequencing data : h...
3509 days ago
